Spatial Transcriptomics Viewer (and related packages)

The Spatial Transcriptomics Viewer allows for visualisation and interaction with spatial transcriptomics data coupled with a tissue image. A manual describing how to use the ST Viewer is included in the repository.
The ST Viewer is available at GitHub.

The ST Analysis package can be used for further analyses based on ST data and selections made using the ST Viewer (e.g. differential expression analysis, clustering, spot classification).
The ST Analysis package is available at GitHub.

For questions regarding these software packages, please contact:

Jose Fernandez jose.fernandez.navarro@scilifelab.se